Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
gene expression
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
334
February, 2021
333
November, 2021
188
May, 2021
110
September, 2023
105
February, 2024
86
May, 2020
56
January, 2021
53
June, 2020
42
March, 2023
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
4
February, 2023
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1595
bed bed3+
401
bigWig
164
bed bed9
152
tsv
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1946
Homo sapiens
Biosample type
2542
tissue
2331
cell line
1991
primary cell
396
in vitro differentiated cells
4
stem cell
Organ
584
epithelium
250
connective tissue
139
vasculature
120
kidney
102
pancreas
100
skin of body
95
blood vessel
46
mammary gland
44
liver
44
musculature of body
41
penis
40
extraembryonic component
35
brain
34
lung
27
heart
24
artery
23
eye
23
intestine
22
embryo
20
vein
16
bronchus
14
bone element
14
lymphatic vessel
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
limb
1
testis
1
thymus
Project
1470
AMP
333
ENCODE
110
KPMP
59
T1D
19
LungMap
Genome assembly (visualization)
1791
hg19
698
GRCh38
annotation_type!
gene expression
BIOSAMPLE
TYPE
1991 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
30
1
B cell
6
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
endothelial cell
15
7
1
2
2
1
2
fibroblast
16
4
1
6
2
macrophage
12
3
3
7
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
regulatory T cell
5
4
5
1
3
1
2
endothelial cell of umbilical vein
2
4
6
5
2
1
hepatocyte
8
3
1
4
1
1
2
mononuclear cell
6
7
6
1
foreskin keratinocyte
4
11
4
natural killer cell
3
5
6
1
3
1
smooth muscle cell
9
6
2
1
1
trophoblast cell
1
5
7
1
4
keratinocyte
2
5
3
2
3
1
1
T-helper 1 cell
3
3
6
3
1
astrocyte
8
4
2
1
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
pancreatic ductal cell
6
3
2
3
1
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
osteoblast
5
2
2
2
1
3
pancreatic beta cell
8
3
3
1
skeletal muscle myoblast
2
2
4
1
3
2
1
T-helper 17 cell
2
3
5
3
1
T-helper 2 cell
2
3
5
3
1
pancreatic alpha cell
7
3
3
1
mammary epithelial cell
1
1
3
3
1
4
mammary gland epithelial cell
1
4
3
3
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
2
1
1
1
1
neurosphere
3
7
3
pancreatic acinar cell
6
3
3
1
pancreatic delta cell
5
4
3
1
bronchial epithelial cell
1
2
4
1
2
2
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
erythroblast
5
2
2
2
skeletal muscle satellite cell
5
2
2
2
dermis blood vessel endothelial cell
2
6
2
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
kidney tubule cell
2
2
3
2
mature neutrophil
1
7
1
naive T cell
3
3
3
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glutamatergic neuron
6
2
hepatic stellate cell
3
1
1
1
1
1
myoepithelial cell of mammary gland
2
4
2
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
choroid plexus epithelial cell
1
1
2
1
1
1
epithelial cell of proximal tubule
1
1
2
1
1
1
glomerular endothelial cell
2
1
2
1
1
kidney glomerular epithelial cell
2
1
2
1
1
luminal epithelial cell of mammary gland
2
3
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
renal cortical epithelial cell
2
1
2
1
1
skeletal muscle fiber
5
2
type II pneumocyte
4
2
1
T-cell
2
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
glomerular visceral epithelial cell
2
1
2
1
kidney epithelial cell
1
1
2
1
1
memory B cell
4
2
mesenchymal stem cell
2
1
1
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
1
olfactory receptor cell
6
pancreatic stellate cell
2
1
3
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
alternatively activated macrophage
1
4
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
non-pigmented ciliary epithelial cell
1
1
2
1
plasma cell
2
1
1
1
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
inflammatory macrophage
1
3
megakaryocyte
2
2
mesothelial cell
2
1
1
pancreatic endothelial cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
Ishikawa
1
1
1
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
adipocyte
2
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
goblet cell
1
2
mammary stem cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Adipose stromal cell
1
1
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Muller cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T Cell
2
Th2 cell
1
1
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
alveolar macrophage
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
leukocyte
2
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive B cel
1
neural cell
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
See all biosamples
Download