Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1044
target gene predictions
872
histone modifications
811
binding sites
503
gene expression
474
accessible chromatin
139
variant allelic effects
75
chromatin state
48
differential activity
40
eQTL
6
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
2
Fine-mapped variants
1
pQTL
1
representative DNase hypersensitivity sites
Date released
2579
February, 2021
1672
September, 2022
292
May, 2021
289
June, 2020
162
February, 2024
144
May, 2020
99
October, 2022
90
August, 2021
61
March, 2023
56
March, 2020
44
November, 2022
43
May, 2022
39
February, 2020
35
August, 2017
30
March, 2024
25
February, 2023
21
January, 2020
9
August, 2018
5
September, 2023
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2022
1
July, 2020
1
June, 2021
1
November, 2019
1
November, 2020
1
October, 2019
Available data
5046
bed bed3+
511
tsv
117
bigWig
108
txt
34
bed bed9+
24
csv
16
bigBed narrowPeak
9
bigBed bed9
5
bed bed9
4
bam
3
bed gappedPeak
3
xls
Organism
5661
Homo sapiens
Biosample type
1978
cell line
1913
tissue
1406
primary cell
405
in vitro differentiated cells
4
stem cell
Organ
531
epithelium
407
kidney
314
brain
312
connective tissue
279
musculature of body
228
lung
210
intestine
194
pancreas
166
limb
165
bodily fluid
162
heart
157
skin of body
156
blood
141
vasculature
135
embryo
131
large intestine
109
extraembryonic component
108
blood vessel
96
liver
93
eye
86
stomach
67
mammary gland
66
adipose tissue
64
bone element
64
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
48
adrenal gland
48
ureter
42
artery
37
gonad
37
thymus
31
esophagus
30
spinal cord
26
spleen
25
uterus
20
testis
18
lymphoid tissue
18
vein
16
ovary
16
thyroid gland
14
mouth
14
nerve
12
pituitary gland
11
bronchus
10
breast
10
lymphatic vessel
9
bone marrow
8
tongue
8
urinary bladder
7
skeleton
7
vagina
5
trachea
3
nose
1
pericardium
Project
5707
AMP
281
KPMP
57
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
6549
hg19
GRCh38
4
hg18
assembly!
GRCh38
BIOSAMPLE
TYPE
5707 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
variant allelic effects
chromatin state
differential activity
eQTL
caQTL
hQTL
sQTL
variant to gene
meQTL
other
Fine-mapped variants
pQTL
representative DNase hypersensitivity sites
cell line
A549
21
19
1
2
1
MCF-7
9
6
2
3
1
EndoC_BH1
1
1
1
8
7
1
1
breast cancer cell
11
9
K562
7
7
1
2
1
1
+ See 757 more…
tissue
heart
37
20
1
1
3
2
2
stomach
40
21
1
1
3
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
1
lung
33
17
1
+ See 234 more…
primary cell
CD8-positive, alpha-beta T cell
7
3
30
3
2
1
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
2
2
monocyte
1
2
1
15
4
1
2
1
1
CD14-positive monocyte
8
19
+ See 313 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
4
4
neural progenitor cell
5
5
2
7
embryonic stem cell
1
1
1
6
5
cardiomyocytes
11
+ See 120 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download