Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
282
accessible chromatin
164
chromatin state
117
target gene predictions
88
histone modifications
35
eQTL
9
gene expression
6
binding sites
6
caQTL
Date released
333
November, 2021
161
September, 2022
97
May, 2021
36
January, 2022
31
February, 2024
23
January, 2020
7
October, 2019
6
May, 2022
4
February, 2023
3
August, 2021
2
November, 2020
2
October, 2022
1
February, 2021
1
May, 2020
Available data
499
bed bed3+
280
bigWig
164
bed bed9
9
tsv
4
bigBed bed9
Organism
707
Homo sapiens
Biosample type
734
tissue
707
primary cell
365
cell line
65
in vitro differentiated cells
Organ
218
epithelium
90
connective tissue
47
vasculature
36
liver
34
blood vessel
27
skin of body
23
pancreas
19
intestine
19
kidney
15
musculature of body
14
heart
13
lung
13
mammary gland
12
brain
11
extraembryonic component
10
adrenal gland
9
stomach
8
eye
6
embryo
6
large intestine
6
penis
5
esophagus
5
lymphatic vessel
5
vein
4
artery
4
bronchus
4
small intestine
3
gonad
3
placenta
2
bone element
2
bone marrow
2
ovary
2
prostate gland
2
thyroid gland
2
uterus
1
mouth
1
spinal cord
1
testis
1
thymus
Project
371
AMP
333
ENCODE
3
T1D
Genome assembly (visualization)
1803
hg19
707
GRCh38
BIOSAMPLE
TYPE
707 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
chromatin state
target gene predictions
histone modifications
eQTL
gene expression
binding sites
caQTL
primary cell
monocyte
13
84
3
fibroblast
16
4
2
macrophage
10
1
7
1
pericyte cell
9
1
9
endothelial cell
11
6
1
hepatocyte
7
1
1
3
5
endothelial cell of hepatic sinusoid
6
4
6
common myeloid progenitor, CD34-positive
13
smooth muscle cell
7
6
excitatory neuron
12
B cell
3
8
T cell
5
4
2
astrocyte
8
1
2
CD4-positive, alpha-beta memory T cell
9
CD8-positive, alpha-beta memory T cell
7
colon epithelial cell
3
3
fibroblast of cardiac tissue
2
3
1
keratinocyte
2
2
2
mononuclear cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
3
2
1
cortical cell of adrenal gland
3
2
endothelial cell of umbilical vein
1
4
erythroblast
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
2
1
2
mammary gland epithelial cell
1
3
1
pancreatic acinar cell
4
1
regulatory T cell
3
2
type II pneumocyte
3
2
CD14-positive monocyte
4
T-helper 1 cell
3
1
T-helper 17 cell
3
1
T-helper 2 cell
3
1
blood vessel smooth muscle cell
2
2
enteric smooth muscle cell
2
2
foreskin keratinocyte
4
gabaergic neuron
2
2
glutamatergic neuron
2
2
natural killer cell
3
1
osteoblast
3
1
pancreatic beta cell
4
pancreatic ductal cell
3
1
skin fibroblast
1
2
1
smooth muscle cell of the esophagus
2
2
trophoblast cell
4
cardiac fibroblast
3
CD4-positive helper T cell
1
2
blood cell
3
endocardial cell
2
1
endothelial cell of lymphatic vessel
2
1
enteric neuron
2
1
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
2
1
kidney tubule cell
1
2
mesothelial cell
2
1
microglial cell
1
1
1
naive T cell
3
neurosphere
3
neutrophil
2
1
oligodendrocyte precursor cell
2
1
pancreatic alpha cell
3
retinal pigment epithelial cell
2
1
schwann cell
2
1
skeletal muscle fiber
3
type I pneumocyte
2
1
CD4-positive, alpha-beta T cell
1
1
CD8-positive, alpha-beta T cell
1
1
Muller cell
2
alveolar macrophage
1
1
astrocyte of the cerebellum
1
1
astrocyte of the hippocampus
1
1
basal cell
1
1
basal cell of epidermis
1
1
brain microvascular endothelial cell
1
1
bronchial epithelial cell
2
cardiac endothelial cell
1
1
choroid plexus epithelial cell
1
1
ciliated cell
1
1
club cell
1
1
colon goblet cell
1
1
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epithelial cell of prostate
2
epithelial cell of proximal tubule
1
1
fat cell
1
1
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
1
1
foveolar cell of stomach
1
1
glomerular endothelial cell
1
1
granular cell of epidermis
1
1
intestinal tuft cell
1
1
kidney capillary endothelial cell
1
1
kidney epithelial cell
1
1
kidney glomerular epithelial cell
1
1
luteal cell
1
1
mast cell
1
1
mature NK T cell
1
1
melanocyte
1
1
memory B cell
1
1
mesangial cell
2
myoepithelial cell
1
1
myoepithelial cell of mammary gland
2
naive t cell
1
1
non keratinizing barrier epithelial cell
1
1
oligodendrocyte
1
1
pancreatic A cell
2
pancreatic delta cell
1
1
paneth cell
1
1
parietal cell
1
1
peptic cell
1
1
plasma cell
1
1
regular atrial cardiac myocyte
1
1
renal cortical epithelial cell
1
1
respiratory goblet cell
1
1
skeletal muscle cell
1
1
skeletal muscle fibroblast
1
1
skeletal muscle myoblast
2
small intestine goblet cell
1
1
smooth muscle cell of the brain vasculature
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
thyroid follicular cell
1
1
type B pancreatic cell
2
type I cell of adrenal cortex
1
1
type I muscle cell
1
1
type II cell of adrenal cortex
1
1
type II muscle cell
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
CD1c-positive myeloid dendritic cell
1
Leydig cell
1
T follicular helper cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic endothelial cell
1
astrocyte of the spinal cord
1
brain pericyte
1
cardiac muscle cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
gastric goblet cell
1
glial cell
1
glomerular visceral epithelial cell
1
goblet cell
1
helper T cell
1
hepatoblast
1
iris pigment epithelial cell
1
islet of Langerhans
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
mammary stem cell
1
megakaryocyte
1
mesenchymal stem cell
1
metanephros
1
naive B cel
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
neuron
1
non-pigmented ciliary epithelial cell
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
retinal bipolar neuron
1
sensory neuron
1
smooth muscle cell of the coronary artery
1
stromal cell of bone marrow
1
sympathetic neuron
1
trophoblast giant cell
1
ureteric bud
1
See all biosamples
Download