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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
478
gene expression
328
candidate regulatory elements
262
accessible chromatin
261
target gene predictions
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
456
February, 2021
281
September, 2023
256
May, 2021
152
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1262
bed bed3+
589
tsv
188
bigWig
164
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2091
Homo sapiens
Biosample type
2652
tissue
2352
cell line
2136
primary cell
470
in vitro differentiated cells
4
stem cell
Organ
692
epithelium
306
kidney
231
connective tissue
163
vasculature
111
blood vessel
108
pancreas
90
skin of body
58
liver
41
penis
40
mammary gland
39
musculature of body
37
extraembryonic component
35
brain
29
artery
25
lung
21
heart
20
embryo
20
vein
19
eye
14
bronchus
14
lymphatic vessel
13
bone element
12
bone marrow
10
prostate gland
9
blood
9
bodily fluid
8
placenta
6
esophagus
5
trachea
4
intestine
4
mouth
4
spinal cord
3
uterus
2
gonad
2
stomach
1
adipose tissue
1
adrenal gland
1
limb
1
pericardium
1
testis
1
thyroid gland
Project
1777
AMP
ENCODE
281
KPMP
59
T1D
19
LungMap
Genome assembly (visualization)
1470
hg19
374
GRCh38
award.project!
ENCODE
BIOSAMPLE
TYPE
2136 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
target gene predictions
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
15
18
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
27
14
13
CD8-positive, alpha-beta T cell
3
7
3
4
30
1
B cell
2
14
3
10
8
CD4-positive, alpha-beta memory T cell
14
9
9
CD14-positive monocyte
8
19
4
hepatocyte
13
1
7
2
4
1
1
2
regulatory T cell
7
5
5
4
1
3
1
2
T-helper 1 cell
7
6
3
3
3
1
endothelial cell
9
5
1
1
2
2
1
2
epithelial cell of proximal tubule
16
2
1
1
1
1
1
CD8-positive, alpha-beta memory T cell
8
7
7
T-helper 17 cell
7
5
2
3
3
1
glomerular endothelial cell
14
2
2
1
1
1
natural killer cell
2
6
3
5
1
3
1
endothelial cell of umbilical vein
6
2
4
5
2
1
mononuclear cell
7
6
6
1
foreskin keratinocyte
11
4
4
T cell
4
2
4
4
2
2
macrophage
2
3
2
3
7
1
trophoblast cell
7
1
5
1
4
T-helper 2 cell
3
5
2
3
3
1
osteoblast
2
2
5
2
2
1
3
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
1
2
2
1
4
pancreatic beta cell
3
6
3
3
1
pancreatic ductal cell
3
4
2
2
3
1
1
skeletal muscle myoblast
1
4
2
2
1
3
2
1
neutrophil
4
3
2
2
2
1
1
pancreatic alpha cell
3
5
3
3
1
endothelial cell of hepatic sinusoid
4
4
6
naive thymus-derived CD4-positive, alpha-beta T cell
1
4
1
2
2
1
1
1
1
pancreatic delta cell
3
4
3
3
1
CD4-positive, alpha-beta T cell
8
2
3
keratinocyte
3
3
2
3
1
1
mammary epithelial cell
3
1
1
3
1
4
neurosphere
7
3
3
bronchial epithelial cell
4
1
2
1
2
2
fibroblast of dermis
4
4
3
1
pancreatic acinar cell
3
3
2
3
1
fibroblast
2
1
6
2
glomerular visceral epithelial cell
5
2
2
1
1
mammary gland epithelial cell
3
3
3
1
1
dermis blood vessel endothelial cell
6
2
2
kidney tubule cell
1
3
2
2
2
epithelial cell of prostate
4
3
2
fibroblast of cardiac tissue
3
3
3
mature neutrophil
1
7
1
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
2
1
retinal pigment epithelial cell
2
2
1
1
1
2
skeletal muscle satellite cell
2
2
2
1
2
astrocyte
1
2
1
2
1
1
fibroblast of breast
4
2
2
fibroblast of mammary gland
2
1
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
1
2
hepatic stellate cell
1
1
2
1
1
1
1
kidney glomerular epithelial cell
1
2
2
1
1
1
myoepithelial cell of mammary gland
4
2
2
pancreatic stellate cell
2
2
1
3
renal cortical epithelial cell
1
2
2
1
1
1
smooth muscle cell
1
3
2
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
1
cardiac muscle cell
2
1
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
kidney epithelial cell
1
2
1
1
1
1
kidney interstitial cell
6
1
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
3
3
1
mesenchymal stem cell
1
1
2
1
1
1
pulmonary artery endothelial cell
2
1
1
1
1
1
skin fibroblast
2
1
2
2
T-cell
4
2
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
2
1
1
2
erythroblast
2
2
2
foreskin melanocyte
4
1
1
gamma-delta T cell
4
2
naive B cell
1
3
2
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
2
1
1
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
2
1
1
1
1
skeletal muscle fiber
2
2
2
smooth muscle cell of the brain vasculature
2
1
1
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
brain microvascular endothelial cell
2
1
1
1
central memory CD8-positive, alpha-beta T cell
3
2
effector memory CD8-positive, alpha-beta T cell
3
2
fibroblast of peridontal ligament
2
1
1
1
fibroblast of the aortic adventitia
2
1
1
1
inflammatory macrophage
1
1
3
iris pigment epithelial cell
2
1
1
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
3
1
1
mesangial cell
5
myofibroblast cell
1
1
3
non-pigmented ciliary epithelial cell
2
1
1
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
type I muscle cell
1
2
1
1
type II muscle cell
1
2
1
1
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
2
1
1
cardiac fibroblast
3
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
fibroblast of gingiva
2
1
1
fibroblast of the conjunctiva
2
1
1
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
2
2
mast cell
1
1
1
1
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pericyte cell
1
1
1
1
plasma cell
1
1
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
stromal cell of bone marrow
2
1
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
basal cell
1
2
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
1
1
1
mammary stem cell
1
1
1
megakaryocyte
1
2
meso-epithelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
1
2
neoplastic cell
1
1
1
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
smooth muscle cell of the coronary artery
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
capillary endothelial cell
2
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
mantle cell lymphoma cell
2
myeloid dendritic cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuronal stem cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
type II pneumocyte
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
ciliated cell
1
club cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
mesothelial cell
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
naive t cell
1
neural progenitor cell
1
neuroendocrine cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pericardium fibroblast
1
peripheral blood
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type I pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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