Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1669candidate regulatory elements
  • 1039target gene predictions
  • 977histone modifications
  • 939chromatin state
  • 811binding sites
  • 570accessible chromatin
  • 395gene expression
  • 158eQTL
  • 83variant allelic effects
  • 72Fine-mapped variants
  • 6caQTL
  • 5hQTL
  • 4sQTL
  • 3meQTL
  • 3other
  • 2variant to gene
  • 1pQTL
  • 1representative DNase hypersensitivity sites
Date released
  • 2590February, 2021
  • 2511September, 2022
  • 389May, 2021
  • 289June, 2020
  • 155May, 2020
  • 128March, 2020
  • 123August, 2021
  • 106January, 2022
  • 99October, 2022
  • 89January, 2020
  • 64February, 2020
  • 49May, 2022
  • 44November, 2022
  • 35August, 2017
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 5106bed bed3+
  • 869bed bed9
  • 462tsv
  • 219bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 4bam
  • 4bigBed narrowPeak
  • 3bed gappedPeak
  • 3xls
Organism
  • 6691Homo sapiens
Biosample type
  • 2559tissue
  • 2173cell line
  • 1568primary cell
  • 434in vitro differentiated cells
  • 3stem cell
Organ
  • 515epithelium
  • 506kidney
  • 461brain
  • 361connective tissue
  • 347musculature of body
  • 297lung
  • 261intestine
  • 243limb
  • 236heart
  • 196vasculature
  • 191skin of body
  • 189bodily fluid
  • 178blood
  • 168pancreas
  • 163large intestine
  • 162embryo
  • 155blood vessel
  • 143extraembryonic component
  • 118liver
  • 106stomach
  • 87adipose tissue
  • 86bone element
  • 80eye
  • 80mammary gland
  • 80small intestine
  • 76prostate gland
  • 71placenta
  • 67artery
  • 64penis
  • 64ureter
  • 62lymph node
  • 61adrenal gland
  • 48thymus
  • 46gonad
  • 43spinal cord
  • 37esophagus
  • 33spleen
  • 28uterus
  • 25nerve
  • 25testis
  • 22lymphoid tissue
  • 22vein
  • 20ovary
  • 19thyroid gland
  • 18mouth
  • 18skeleton
  • 12breast
  • 12bronchus
  • 12lymphatic vessel
  • 12pituitary gland
  • 10bone marrow
  • 9tongue
  • 9urinary bladder
  • 9vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 6738AMP
  • 333ENCODE
  • 58T1D
  • 19LungMap
  • 5community
Genome assembly (visualization)
  • 6213hg19
  • 1314GRCh38
  • 4hg18
BIOSAMPLE
TYPE

6738 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
binding sites
accessible chromatin
gene expression
eQTL
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
meQTL
other
variant to gene
pQTL
representative DNase hypersensitivity sites
tissue
heart37201211432
stomach402111931
kidney291421619711
brain291631812121
lung3317161
cell line
A549211911821
MCF-7962531
K562771721
EndoC_BH1111881
breast cancer cell119
primary cell
monocyte186117154211
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell7330123
B cell1310822
CD4-positive, alpha-beta memory T cell1499
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910110111
adipocyte4616131
embryonic stem cell11516
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2023 Regents of the University of California.

  • UC San Diego