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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
accessible chromatin
478
gene expression
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
482
September, 2022
455
February, 2021
281
September, 2023
243
May, 2021
121
February, 2024
111
November, 2021
55
March, 2023
39
May, 2020
36
January, 2022
31
October, 2022
29
August, 2021
28
January, 2021
27
May, 2022
16
February, 2020
9
August, 2018
6
August, 2017
5
March, 2020
4
February, 2023
2
January, 2020
2
October, 2019
1
July, 2020
1
March, 2024
1
November, 2020
Available data
1114
bed bed3+
589
tsv
164
bed bed9
108
txt
27
bed bed9+
16
bigWig
7
bigBed narrowPeak
4
bigBed bed9
Organism
1985
Homo sapiens
Biosample type
2455
tissue
2189
cell line
1985
primary cell
401
in vitro differentiated cells
4
stem cell
Organ
660
epithelium
286
kidney
219
connective tissue
144
vasculature
97
blood vessel
93
skin of body
89
pancreas
46
liver
41
mammary gland
40
penis
34
extraembryonic component
33
musculature of body
26
brain
25
artery
25
heart
25
lung
18
embryo
18
vein
16
eye
14
lymphatic vessel
13
bronchus
12
bone element
12
intestine
11
bone marrow
10
prostate gland
8
blood
8
bodily fluid
8
esophagus
7
placenta
6
stomach
5
adrenal gland
4
mouth
4
spinal cord
4
trachea
3
large intestine
3
uterus
2
gonad
2
small intestine
2
thyroid gland
1
adipose tissue
1
limb
1
ovary
1
pericardium
1
testis
Project
1563
AMP
281
KPMP
111
ENCODE
30
T1D
Genome assembly (visualization)
1320
hg19
425
GRCh38
annotation_type!
accessible chromatin
BIOSAMPLE
TYPE
1985 results
search-icon
table-tab-icon
Clear Filters
gene expression
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
15
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
3
5
7
30
1
B cell
2
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
hepatocyte
13
3
1
4
1
1
2
endothelial cell
9
7
1
2
2
1
2
regulatory T cell
7
4
5
1
3
1
2
CD8-positive, alpha-beta memory T cell
7
8
7
epithelial cell of proximal tubule
16
1
2
1
1
1
T-helper 1 cell
7
3
6
3
1
mononuclear cell
6
7
6
1
T-helper 17 cell
7
3
5
3
1
foreskin keratinocyte
4
11
4
glomerular endothelial cell
14
1
2
1
1
endothelial cell of umbilical vein
4
6
5
2
1
natural killer cell
2
5
6
1
3
1
trophoblast cell
5
7
1
4
T cell
4
4
4
2
2
fibroblast of lung
4
6
4
2
macrophage
2
3
3
7
1
T-helper 2 cell
3
3
5
3
1
foreskin fibroblast
2
6
2
1
4
keratinocyte
5
3
2
3
1
1
neutrophil
3
4
2
2
2
1
1
CD4-positive, alpha-beta T cell
3
8
3
skeletal muscle myoblast
1
2
4
1
3
2
1
fibroblast
4
1
6
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
2
1
1
1
1
neurosphere
3
7
3
pancreatic ductal cell
3
3
2
3
1
1
fibroblast of dermis
4
4
3
1
mammary epithelial cell
1
3
3
1
4
mammary gland epithelial cell
4
3
3
1
1
osteoblast
2
2
2
2
1
3
pericyte cell
10
1
1
bronchial epithelial cell
2
4
1
2
2
pancreatic delta cell
3
4
3
1
smooth muscle cell
1
6
2
1
1
dermis blood vessel endothelial cell
2
6
2
endothelial cell of hepatic sinusoid
4
6
fibroblast of cardiac tissue
4
3
3
pancreatic acinar cell
3
3
3
1
pancreatic alpha cell
3
3
3
1
pancreatic beta cell
3
3
3
1
astrocyte
1
4
2
1
1
epithelial cell of prostate
3
4
2
glomerular visceral epithelial cell
5
1
2
1
mature neutrophil
1
7
1
naive T cell
3
3
3
fibroblast of breast
2
4
2
kidney tubule cell
1
2
3
2
myoepithelial cell of mammary gland
2
4
2
skeletal muscle satellite cell
2
2
2
2
fibroblast of mammary gland
1
2
1
1
2
fibroblast of pulmonary artery
1
2
1
1
2
fibroblast of villous mesenchyme
1
2
1
1
2
kidney loop of Henle thin ascending limb epithelial cell
7
retinal pigment epithelial cell
1
2
1
1
2
skin fibroblast
3
2
2
CD1c-positive myeloid dendritic cell
1
2
1
1
1
T-cell
2
4
alternatively activated macrophage
1
1
4
cardiac muscle cell
1
2
1
2
choroid plexus epithelial cell
1
2
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
1
2
1
2
erythroblast
2
2
2
foreskin melanocyte
1
4
1
hepatic stellate cell
1
1
1
1
1
1
kidney epithelial cell
1
1
2
1
1
kidney glomerular epithelial cell
1
1
2
1
1
kidney interstitial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
1
olfactory receptor cell
6
pancreatic stellate cell
2
1
3
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
1
2
1
1
1
renal cortical epithelial cell
1
1
2
1
1
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
astrocyte of the cerebellum
1
2
1
1
astrocyte of the hippocampus
1
2
1
1
fibroblast of the aortic adventitia
1
2
1
1
inflammatory macrophage
1
1
3
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
3
1
1
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
memory B cell
3
2
mesangial cell
5
mesenchymal stem cell
1
1
1
1
1
skeletal muscle cell
1
2
1
1
smooth muscle cell of the brain vasculature
1
2
1
1
CD4-positive helper T cell
2
2
adult endothelial progenitor cell
3
1
astrocyte of the spinal cord
1
2
1
brain microvascular endothelial cell
1
2
1
cardiac fibroblast
3
1
fibroblast of gingiva
1
2
1
fibroblast of peridontal ligament
1
2
1
fibroblast of the conjunctiva
1
2
1
gamma-delta T cell
4
iris pigment epithelial cell
1
2
1
kidney capillary endothelial cell
1
1
1
1
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
myofibroblast cell
1
3
nephron progenitor
4
non-pigmented ciliary epithelial cell
1
2
1
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic endothelial cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
plasma cell
1
1
1
1
skeletal muscle fiber
2
2
stromal cell of bone marrow
1
2
1
tracheal epithelial cell
2
2
type I muscle cell
1
1
1
1
type II muscle cell
1
1
1
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
T follicular helper cell
2
1
activated CD4-positive, alpha-beta T cell
2
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
aortic adventitial fibroblast
1
2
basal cell
1
2
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
2
1
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive B cell
1
2
pancreatic A cell
3
pancreatic quiescent stellate cell
3
pre-B acute lymphoblastic leukemia cell
2
1
preadipocyte
2
1
regular cardiac myocyte
1
1
1
renal epithelial cell
1
2
smooth muscle cell of the coronary artery
1
1
1
type B pancreatic cell
3
type II pneumocyte
2
1
cardiac fibroblast
2
Adipose stromal cell
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Ishikawa
1
1
Kupffer cell
2
Rhabdoid Tumor of the Kidney
1
1
Th1 cell
1
1
Th17 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
acute myeloid leukemia cell
2
adipocyte
1
1
aortic endothelial cell
1
1
blood vessel smooth muscle cell
2
brain pericyte
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enteric smooth muscle cell
2
erythroid cell
1
1
erythroid progenitor cell
1
1
fat cell
1
1
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
leukocyte
2
mantle cell lymphoma cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesothelial cell
1
1
microglial cell
1
1
naive t cell
1
1
neoplastic cell
1
1
neuronal stem cell
1
1
pancreatic endocrine cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood stem cell
1
1
peripheral blood-derived erythroblast
2
prostate gland cancer cell
1
1
pulmonary interstitial fibroblast
1
1
renal proximal tubule cell
1
1
renal vesicle
2
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
1
thyroid follicular cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-cell lymphoma cell
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD56-positive, CD161-positive immature natural killer cell
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
Th2 cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell of epidermis
1
bone cell
1
bone marrow cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac endothelial cell
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
ciliated cell
1
club cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
cytotoxic T cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
glial cell
1
granular cell of epidermis
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
intestinal tuft cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
luminal epithelial cell of prostatic duct
1
luteal cell
1
lymphocyte of B lineage
1
mature B cell
1
mature NK T cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
myoepithelial cell
1
naive regulatory T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neural progenitor cell
1
neutrophil progenitor cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
pancreatic cell
1
pancreatic epsilon cell
1
paneth cell
1
pericardium fibroblast
1
peripheral blood
1
plasmacytoid dendritic cell
1
primordial germ cell
1
progenitor cell
1
proximal tubule
1
quiescent pancreatic stellate cell
1
regular atrial cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
respiratory goblet cell
1
schwann cell
1
seminoma cell
1
sensory neuron
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
sperm
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
type I cell of adrenal cortex
1
type I pneumocyte
1
type II cell of adrenal cortex
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
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