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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
454
February, 2021
326
September, 2022
281
September, 2023
222
November, 2021
210
May, 2021
146
February, 2024
70
May, 2020
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
36
January, 2022
31
October, 2022
28
January, 2021
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
4
February, 2023
4
March, 2020
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1223
bed bed3+
589
tsv
407
bigWig
164
bed bed9
108
txt
27
bed bed9+
13
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2052
Homo sapiens
Biosample type
2134
tissue
2097
primary cell
1953
cell line
405
in vitro differentiated cells
1
stem cell
Organ
705
epithelium
300
kidney
231
connective tissue
151
vasculature
102
blood vessel
102
pancreas
74
skin of body
59
liver
45
musculature of body
35
mammary gland
34
penis
31
brain
31
extraembryonic component
26
artery
26
lung
23
heart
20
eye
17
embryo
16
vein
15
intestine
14
lymphatic vessel
13
bronchus
11
bone element
10
bone marrow
9
blood
9
bodily fluid
9
placenta
7
adrenal gland
7
esophagus
7
prostate gland
7
stomach
5
trachea
4
uterus
3
gonad
3
large intestine
3
mouth
3
spinal cord
2
small intestine
2
thyroid gland
1
adipose tissue
1
ovary
1
pericardium
1
testis
1
thymus
Project
1544
AMP
281
KPMP
222
ENCODE
31
T1D
19
LungMap
Genome assembly (visualization)
1431
hg19
590
GRCh38
annotation_type!
target gene predictions
BIOSAMPLE
TYPE
2097 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
86
1
4
2
1
1
CD8-positive, alpha-beta T cell
4
3
7
30
1
common myeloid progenitor, CD34-positive
27
13
endothelial cell
15
9
1
2
2
1
2
B cell
6
2
14
8
hepatocyte
8
13
1
4
1
1
2
fibroblast
16
1
6
2
macrophage
12
2
3
7
1
regulatory T cell
5
7
5
1
3
1
2
CD4-positive, alpha-beta memory T cell
14
9
epithelial cell of proximal tubule
1
16
2
1
1
1
T-helper 1 cell
3
7
6
3
1
glomerular endothelial cell
2
14
2
1
1
T cell
6
4
4
2
2
T-helper 17 cell
2
7
5
3
1
endothelial cell of hepatic sinusoid
6
4
6
endothelial cell of umbilical vein
2
6
5
2
1
natural killer cell
3
2
6
1
3
1
pancreatic ductal cell
6
3
2
3
1
1
CD8-positive, alpha-beta memory T cell
8
7
foreskin keratinocyte
11
4
osteoblast
5
2
2
2
1
3
pancreatic beta cell
8
3
3
1
T-helper 2 cell
2
3
5
3
1
foreskin fibroblast
1
6
2
1
4
mononuclear cell
7
6
1
pancreatic alpha cell
7
3
3
1
skeletal muscle myoblast
2
1
4
1
3
2
1
smooth muscle cell
9
1
2
1
1
astrocyte
8
1
2
1
1
pancreatic acinar cell
6
3
3
1
trophoblast cell
1
7
1
4
CD14-positive monocyte
8
4
CD4-positive, alpha-beta T cell
1
8
3
excitatory neuron
12
fibroblast of lung
6
4
2
keratinocyte
2
3
2
3
1
1
mammary epithelial cell
1
3
3
1
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
4
2
1
1
1
1
neutrophil
4
2
2
2
1
1
pancreatic delta cell
5
3
3
1
pericyte cell
10
1
1
skeletal muscle satellite cell
5
2
2
2
bronchial epithelial cell
1
4
1
2
2
glomerular visceral epithelial cell
2
5
2
1
neurosphere
7
3
erythroblast
5
2
2
mammary gland epithelial cell
1
3
3
1
1
mature neutrophil
1
7
1
retinal pigment epithelial cell
3
2
1
1
2
skeletal muscle fiber
5
2
2
dermis blood vessel endothelial cell
6
2
fibroblast of cardiac tissue
2
3
3
fibroblast of dermis
4
3
1
hepatic stellate cell
3
1
1
1
1
1
kidney tubule cell
2
1
3
2
fibroblast of mammary gland
1
2
1
1
2
fibroblast of pulmonary artery
1
2
1
1
2
fibroblast of villous mesenchyme
1
2
1
1
2
kidney glomerular epithelial cell
2
1
2
1
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
4
3
mesangial cell
2
5
mesenchymal stem cell
2
1
1
1
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
1
pancreatic stellate cell
2
2
3
renal cortical epithelial cell
2
1
2
1
1
CD1c-positive myeloid dendritic cell
1
2
1
1
1
cardiac muscle cell
1
2
1
2
choroid plexus epithelial cell
1
2
1
1
1
enterocyte
3
3
epithelial cell of prostate
4
2
fibroblast of breast
4
2
gamma-delta T cell
2
4
glutamatergic neuron
6
kidney epithelial cell
1
1
2
1
1
myoepithelial cell of mammary gland
4
2
naive T cell
3
3
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
1
2
1
1
1
skin fibroblast
2
2
2
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
alternatively activated macrophage
1
4
astrocyte of the cerebellum
1
2
1
1
astrocyte of the hippocampus
1
2
1
1
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
epithelial cell of esophagus
2
1
2
foreskin melanocyte
4
1
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
pancreatic endothelial cell
1
1
3
pancreatic polypeptide-secreting cell
2
2
1
plasma cell
2
1
1
1
skeletal muscle cell
1
2
1
1
smooth muscle cell of the brain vasculature
1
2
1
1
tracheal epithelial cell
1
2
2
type II pneumocyte
4
1
T-cell
4
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
basal cell
2
2
brain microvascular endothelial cell
1
2
1
cardiac fibroblast
3
1
cortical cell of adrenal gland
3
1
dermis lymphatic vessel endothelial cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
fibroblast of peridontal ligament
1
2
1
fibroblast of the aortic adventitia
2
1
1
inflammatory macrophage
1
3
iris pigment epithelial cell
1
2
1
kidney capillary endothelial cell
1
1
1
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
luminal epithelial cell of mammary gland
2
1
1
lung microvascular endothelial cell
3
1
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
naive B cell
3
1
nephron progenitor
4
non-pigmented ciliary epithelial cell
1
2
1
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
2
1
renal epithelial cell
1
1
2
vascular associated smooth muscle cell
2
2
CD4-positive helper T cell
1
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
adult endothelial progenitor cell
3
astrocyte of the spinal cord
2
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
erythroid cell
1
1
1
fibroblast of gingiva
2
1
fibroblast of the conjunctiva
2
1
gabaergic neuron
3
glial cell
2
1
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
1
1
1
mesothelial cell
2
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
2
1
neoplastic cell
1
1
1
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
stromal cell of bone marrow
2
1
type I pneumocyte
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
ciliated cell
2
club cell
2
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endocardial cell
2
endothelial cell of coronary artery
1
1
enteric neuron
2
enteric smooth muscle cell
2
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
megakaryocyte
2
microglial cell
1
1
myeloid dendritic cell
1
1
naive t cell
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic endocrine cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
schwann cell
2
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the coronary artery
1
1
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
1
thyroid follicular cell
1
1
ureteric bud
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell of epidermis
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac endothelial cell
1
cardiac ventricle fibroblast
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
gastric goblet cell
1
granular cell of epidermis
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature NK T cell
1
mature eosinophil
1
melanocyte
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
myoepithelial cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
paneth cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
regular atrial cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
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