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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
469
gene expression
328
candidate regulatory elements
255
target gene predictions
202
accessible chromatin
152
differential activity
122
histone modifications
94
binding sites
81
variant allelic effects
33
chromatin state
9
eQTL
5
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
455
February, 2021
326
September, 2022
281
September, 2023
159
May, 2021
121
February, 2024
85
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
39
August, 2021
34
May, 2022
29
October, 2022
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
6
August, 2017
5
March, 2020
1
January, 2022
1
July, 2020
1
June, 2021
1
March, 2024
1
November, 2020
Available data
1096
bed bed3+
580
tsv
130
bigWig
108
txt
27
bed bed9+
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
1717
Homo sapiens
Biosample type
1987
cell line
1918
tissue
1762
primary cell
405
in vitro differentiated cells
4
stem cell
Organ
601
epithelium
290
kidney
191
connective tissue
122
vasculature
103
pancreas
80
blood vessel
73
skin of body
35
musculature of body
35
penis
33
mammary gland
29
extraembryonic component
27
liver
25
artery
23
brain
21
lung
17
heart
16
embryo
15
eye
15
vein
12
bone element
12
bronchus
12
lymphatic vessel
11
bone marrow
9
blood
9
bodily fluid
8
prostate gland
7
placenta
5
esophagus
5
trachea
4
intestine
3
mouth
3
spinal cord
3
uterus
2
stomach
1
adipose tissue
1
adrenal gland
1
gonad
1
limb
1
pericardium
1
thyroid gland
Project
1406
AMP
281
KPMP
56
T1D
19
LungMap
Genome assembly (visualization)
1803
hg19
GRCh38
assembly!
GRCh38
BIOSAMPLE
TYPE
1762 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
target gene predictions
accessible chromatin
differential activity
histone modifications
binding sites
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
CD8-positive, alpha-beta T cell
3
7
4
3
30
1
common myeloid progenitor, CD34-positive
27
14
monocyte
15
2
5
2
1
1
2
1
1
B cell
2
14
10
3
CD14-positive monocyte
8
19
CD4-positive, alpha-beta memory T cell
14
9
regulatory T cell
7
5
4
5
1
1
endothelial cell
9
1
4
1
2
2
1
1
epithelial cell of proximal tubule
16
2
1
1
1
T-helper 1 cell
7
6
3
3
glomerular endothelial cell
14
2
1
1
1
T-helper 17 cell
7
5
3
2
natural killer cell
2
6
5
3
1
hepatocyte
8
1
2
1
1
1
2
CD8-positive, alpha-beta memory T cell
8
7
endothelial cell of umbilical vein
6
4
1
2
1
1
foreskin fibroblast
6
2
1
2
4
foreskin keratinocyte
11
4
pancreatic ductal cell
3
2
3
3
2
1
1
mononuclear cell
7
6
1
pancreatic alpha cell
3
3
4
3
1
pancreatic beta cell
3
3
4
3
1
pancreatic delta cell
3
3
4
3
1
skeletal muscle myoblast
1
4
2
2
1
2
1
1
trophoblast cell
7
5
1
1
CD4-positive, alpha-beta T cell
8
2
3
T-helper 2 cell
3
5
3
2
fibroblast of lung
6
4
2
1
mammary epithelial cell
3
1
1
3
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
4
2
1
1
1
1
1
1
osteoblast
2
2
2
2
2
3
neutrophil
4
3
1
2
1
1
T cell
4
4
1
2
keratinocyte
3
3
2
1
1
1
pancreatic acinar cell
3
2
2
3
1
bronchial epithelial cell
4
2
1
1
2
glomerular visceral epithelial cell
5
2
1
2
neurosphere
7
3
fibroblast of dermis
4
4
1
macrophage
2
2
2
3
mature neutrophil
1
1
7
dermis blood vessel endothelial cell
6
2
mammary gland epithelial cell
3
3
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
3
pancreatic stellate cell
2
1
2
3
epithelial cell of prostate
4
3
fibroblast
1
6
fibroblast of mammary gland
2
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
2
kidney interstitial cell
6
1
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
1
3
2
1
memory B cell
3
1
3
retinal pigment epithelial cell
2
1
1
1
2
skeletal muscle satellite cell
2
2
1
2
smooth muscle cell
1
2
2
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
T-cell
4
2
alternatively activated macrophage
1
1
4
astrocyte
1
2
2
1
cardiac muscle cell
2
1
1
2
erythroblast
2
2
2
fibroblast of breast
4
2
fibroblast of cardiac tissue
3
3
gamma-delta T cell
4
2
hepatic stellate cell
1
1
1
1
1
1
kidney glomerular epithelial cell
1
2
1
1
1
mesenchymal stem cell
1
1
2
1
1
myoepithelial cell of mammary gland
4
2
naive B cell
1
2
3
naive T cell
3
3
pancreatic polypeptide-secreting cell
2
1
2
1
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
2
1
1
1
1
renal cortical epithelial cell
1
2
1
1
1
skeletal muscle fiber
2
2
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
central memory CD8-positive, alpha-beta T cell
3
2
choroid plexus epithelial cell
2
1
1
1
effector memory CD8-positive, alpha-beta T cell
3
2
epithelial cell of esophagus
2
1
2
foreskin melanocyte
4
1
inflammatory macrophage
1
1
3
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney epithelial cell
1
2
1
1
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
myofibroblast cell
1
1
3
pancreatic endothelial cell
1
1
3
skin fibroblast
2
2
1
tracheal epithelial cell
1
2
2
type I muscle cell
1
2
1
1
type II muscle cell
1
2
1
1
T follicular helper cell
2
2
acute myeloid leukemia cell
2
2
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
astrocyte of the cerebellum
2
1
1
astrocyte of the hippocampus
2
1
1
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
fibroblast of peridontal ligament
2
1
1
glutamatergic neuron
4
iris pigment epithelial cell
2
1
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
lung microvascular endothelial cell
3
1
mast cell
1
1
1
1
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
nephron progenitor
4
non-pigmented ciliary epithelial cell
2
1
1
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
plasma cell
1
1
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
skeletal muscle cell
2
1
1
smooth muscle cell of the brain vasculature
2
1
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
2
1
adipocyte
1
1
1
aortic endothelial cell
2
1
astrocyte of the spinal cord
2
1
basal cell
1
2
bone marrow cell
2
1
brain microvascular endothelial cell
2
1
enterocyte
3
erythroid cell
1
1
1
fibroblast of gingiva
2
1
fibroblast of the aortic adventitia
2
1
fibroblast of the conjunctiva
2
1
kidney capillary endothelial cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
megakaryocyte
2
1
meso-epithelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive regulatory T cell
1
2
neoplastic cell
1
1
1
pancreatic quiescent stellate cell
3
pericyte cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
1
2
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
stromal cell of bone marrow
2
1
cardiac fibroblast
2
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
brain pericyte
1
1
capillary endothelial cell
2
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
luminal epithelial cell of mammary gland
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
myeloid dendritic cell
1
1
naive B cel
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuronal stem cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
type II pneumocyte
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
ciliated cell
1
club cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
mesothelial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
naive t cell
1
neural progenitor cell
1
neuroendocrine cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pericardium fibroblast
1
peripheral blood
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
seminoma cell
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type I pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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