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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
328
candidate regulatory elements
307
gene expression
233
target gene predictions
214
accessible chromatin
210
histone modifications
197
chromatin state
100
binding sites
81
variant allelic effects
44
eQTL
42
differential activity
9
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
456
February, 2021
256
May, 2021
151
February, 2024
86
May, 2020
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
29
October, 2022
23
January, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1184
bed bed3+
308
tsv
164
bed bed9
141
bigWig
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1732
Homo sapiens
Biosample type
2647
tissue
2343
cell line
1777
primary cell
470
in vitro differentiated cells
4
stem cell
Organ
510
epithelium
211
connective tissue
166
kidney
125
vasculature
90
skin of body
89
blood vessel
88
pancreas
58
liver
41
penis
40
mammary gland
39
musculature of body
37
extraembryonic component
35
brain
24
artery
22
lung
21
heart
20
embryo
20
vein
19
eye
13
bronchus
11
bone element
10
bone marrow
10
prostate gland
9
blood
9
bodily fluid
8
lymphatic vessel
8
placenta
6
esophagus
5
trachea
4
intestine
4
mouth
4
spinal cord
3
uterus
2
gonad
2
stomach
1
adipose tissue
1
adrenal gland
1
limb
1
pericardium
1
testis
1
thyroid gland
Project
1777
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
Genome assembly (visualization)
1394
hg19
371
GRCh38
BIOSAMPLE
TYPE
1777 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
accessible chromatin
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
differential activity
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
15
1
17
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
27
14
13
CD8-positive, alpha-beta T cell
7
3
3
2
30
1
B cell
14
2
10
2
8
CD4-positive, alpha-beta memory T cell
14
9
9
CD14-positive monocyte
8
19
4
hepatocyte
1
13
2
7
4
1
1
2
regulatory T cell
5
7
3
4
1
3
1
2
T-helper 1 cell
6
7
3
3
3
1
epithelial cell of proximal tubule
2
16
1
1
1
1
1
CD8-positive, alpha-beta memory T cell
8
7
7
T-helper 17 cell
5
7
3
2
3
1
endothelial cell
9
4
1
2
2
1
2
glomerular endothelial cell
2
14
1
2
1
1
endothelial cell of umbilical vein
6
4
2
5
2
1
mononuclear cell
7
6
6
1
foreskin keratinocyte
11
4
4
natural killer cell
6
2
4
1
1
3
1
trophoblast cell
7
5
1
1
4
T cell
4
4
1
4
2
2
T-helper 2 cell
5
3
3
2
3
1
osteoblast
2
2
2
5
2
1
3
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
2
1
2
1
4
skeletal muscle myoblast
4
1
2
2
1
3
2
1
macrophage
2
1
1
3
7
1
neutrophil
4
3
2
2
2
1
1
endothelial cell of hepatic sinusoid
4
4
6
pancreatic ductal cell
3
1
3
2
1
1
3
CD4-positive, alpha-beta T cell
8
2
3
keratinocyte
3
3
2
3
1
1
mammary epithelial cell
3
1
1
3
1
4
neurosphere
7
3
3
bronchial epithelial cell
4
2
1
1
2
2
fibroblast of dermis
4
4
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
4
1
1
2
1
1
1
1
pancreatic beta cell
3
1
4
1
3
fibroblast
2
1
6
2
glomerular visceral epithelial cell
2
5
1
2
1
mammary gland epithelial cell
3
3
3
1
1
pancreatic alpha cell
3
1
3
1
3
dermis blood vessel endothelial cell
6
2
2
kidney tubule cell
3
1
2
2
2
pancreatic acinar cell
3
1
2
1
3
pancreatic delta cell
3
1
2
1
3
epithelial cell of prostate
4
3
2
fibroblast of cardiac tissue
3
3
3
mature neutrophil
1
7
1
naive T cell
3
3
3
retinal pigment epithelial cell
2
1
2
1
1
2
skeletal muscle satellite cell
2
2
1
2
2
astrocyte
2
1
2
1
1
1
fibroblast of breast
4
2
2
fibroblast of mammary gland
2
1
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
1
2
hepatic stellate cell
1
1
1
2
1
1
1
kidney glomerular epithelial cell
2
1
1
2
1
1
myoepithelial cell of mammary gland
4
2
2
renal cortical epithelial cell
2
1
1
2
1
1
smooth muscle cell
1
3
2
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
1
cardiac muscle cell
2
1
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
kidney epithelial cell
2
1
1
1
1
1
kidney interstitial cell
6
1
kidney loop of Henle thin ascending limb epithelial cell
7
mesenchymal stem cell
1
1
2
1
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
1
2
1
pulmonary artery endothelial cell
2
1
1
1
1
1
skin fibroblast
2
2
1
2
T-cell
4
2
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
2
1
1
2
erythroblast
2
2
2
foreskin melanocyte
4
1
1
gamma-delta T cell
4
2
olfactory receptor cell
6
pancreatic stellate cell
2
1
3
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
2
1
1
1
1
skeletal muscle fiber
2
2
2
smooth muscle cell of the brain vasculature
2
1
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
T follicular helper cell
2
2
1
brain microvascular endothelial cell
2
1
1
1
central memory CD8-positive, alpha-beta T cell
3
2
effector memory CD8-positive, alpha-beta T cell
3
2
fibroblast of peridontal ligament
2
1
1
1
fibroblast of the aortic adventitia
2
1
1
1
inflammatory macrophage
1
1
3
iris pigment epithelial cell
2
1
1
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
3
1
1
memory B cell
3
2
mesangial cell
5
non-pigmented ciliary epithelial cell
2
1
1
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
type I muscle cell
1
2
1
1
type II muscle cell
1
2
1
1
acute myeloid leukemia cell
2
2
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
2
1
1
cardiac fibroblast
3
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
fibroblast of gingiva
2
1
1
fibroblast of the conjunctiva
2
1
1
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
leukocyte
2
2
mast cell
1
1
1
1
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
myofibroblast cell
1
3
naive B cell
1
1
2
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
plasma cell
1
1
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
stromal cell of bone marrow
2
1
1
vascular associated smooth muscle cell
2
2
Ishikawa
1
1
1
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
1
1
1
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
1
2
neoplastic cell
1
1
1
pancreatic quiescent stellate cell
3
pericyte cell
1
1
1
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
smooth muscle cell of the coronary artery
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
basal cell
2
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
erythroid progenitor cell
1
1
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
mantle cell lymphoma cell
2
myeloid dendritic cell
1
1
neural cell
1
1
neuronal stem cell
1
1
pancreatic endocrine cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
colorectal cancer
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
mesothelial cell
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
naive t cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pericardium fibroblast
1
peripheral blood
1
plasmacytoid dendritic cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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