Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
253
gene expression
accessible chromatin
122
target gene predictions
100
candidate regulatory elements
92
differential activity
53
chromatin state
43
binding sites
41
variant allelic effects
28
histone modifications
3
eQTL
2
caQTL
Date released
196
February, 2021
155
September, 2023
146
September, 2022
50
February, 2024
49
November, 2021
38
March, 2023
27
May, 2021
15
August, 2021
14
May, 2020
10
January, 2021
9
February, 2020
6
August, 2018
6
March, 2020
6
October, 2022
3
August, 2017
2
February, 2023
2
January, 2020
2
March, 2024
1
July, 2020
Available data
338
bed bed3+
324
tsv
78
txt
50
bed bed9
16
bigWig
7
bigBed narrowPeak
6
csv
2
bigBed bed9
Organism
737
Homo sapiens
Biosample type
660
primary cell
31
cell line
29
tissue
17
in vitro differentiated cells
Organ
737
epithelium
602
kidney
424
brain
370
connective tissue
348
musculature of body
296
lung
268
intestine
230
vasculature
229
heart
224
limb
212
pancreas
206
bodily fluid
203
embryo
195
blood
191
skin of body
178
blood vessel
164
large intestine
137
extraembryonic component
132
liver
111
stomach
82
adipose tissue
81
small intestine
80
mammary gland
80
uterus
74
bone element
73
prostate gland
69
placenta
66
adrenal gland
64
artery
61
penis
60
ureter
54
lymph node
50
eye
47
thymus
45
gonad
41
esophagus
41
spinal cord
32
spleen
24
testis
22
lymphoid tissue
22
nerve
21
ovary
21
thyroid gland
21
vein
18
mouth
17
lymphatic vessel
13
bronchus
13
pituitary gland
12
breast
11
bone marrow
10
skeleton
10
vagina
9
tongue
9
urinary bladder
4
trachea
3
nose
1
pericardium
Project
521
AMP
155
KPMP
49
ENCODE
10
T1D
2
community
Genome assembly (visualization)
389
hg19
119
GRCh38
annotation_type!
accessible chromatin
BIOSAMPLE
TYPE
737 results
search-icon
table-tab-icon
Clear Filters
gene expression
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
hepatocyte
13
3
1
1
1
2
4
endothelial cell
9
7
2
2
1
1
2
epithelial cell of proximal tubule
16
1
2
1
1
1
foreskin keratinocyte
4
11
4
glomerular endothelial cell
14
1
2
1
1
+ See 133 more…
cell line
EndoC_BH1
8
1
3
1
keratinocyte
3
1
colon epithelial cell
1
1
1
choroid plexus epithelial cell
1
1
dermis lymphatic vessel endothelial cell
1
1
+ See 5 more…
tissue
breast epithelium
3
5
2
esophagus squamous epithelium
2
6
2
kidney epithelium
1
1
breast - mammary tissue
1
corneal epithelium
1
+ See 5 more…
in vitro differentiated cells
hepatocyte
1
2
1
hepatocyte(AFP)
3
pancreatic ductal cell
3
foreskin keratinocyte
1
1
mammary gland epithelial cell
1
1
+ See 3 more…
See all biosamples
Download