Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
134
candidate regulatory elements
97
target gene predictions
89
chromatin state
66
accessible chromatin
62
histone modifications
43
gene expression
39
Fine-mapped variants
37
eQTL
29
binding sites
21
variant allelic effects
4
differential activity
1
caQTL
Date released
226
September, 2022
136
February, 2021
48
March, 2020
32
January, 2020
30
February, 2024
26
June, 2020
22
May, 2020
20
February, 2020
19
January, 2022
14
May, 2021
10
August, 2021
9
August, 2017
7
October, 2022
5
November, 2021
4
March, 2023
4
May, 2019
3
September, 2023
2
May, 2022
2
November, 2019
1
July, 2020
1
March, 2024
1
September, 2018
Available data
410
bed bed3+
95
tsv
80
bed bed9
44
bigWig
7
bigBed bed9
3
csv
1
bam
Organism
621
Homo sapiens
Biosample type
407
tissue
105
cell line
98
primary cell
11
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
617
AMP
5
ENCODE
Genome assembly (visualization)
547
hg19
212
GRCh38
2
hg18
BIOSAMPLE
TYPE
622 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
gene expression
Fine-mapped variants
eQTL
binding sites
variant allelic effects
differential activity
caQTL
tissue
brain
29
16
18
2
3
1
2
1
1
liver
13
10
9
4
2
1
7
1
1
1
caudate nucleus
5
3
4
2
1
1
3
2
1
substantia nigra
5
2
3
1
1
3
3
cerebellum
3
2
2
1
1
2
3
2
+ See 58 more…
cell line
HepG2
2
3
2
2
5
3
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 13 more…
primary cell
hepatocyte
1
3
1
8
4
13
1
2
endothelial cell of hepatic sinusoid
6
4
6
hepatic stellate cell
1
1
1
3
1
1
1
choroid plexus epithelial cell
2
1
1
1
1
1
astrocyte of the cerebellum
2
1
1
1
1
+ See 9 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download