Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
141
candidate regulatory elements
92
target gene predictions
74
chromatin state
28
accessible chromatin
18
binding sites
13
histone modifications
4
variant allelic effects
3
eQTL
3
gene expression
Date released
206
September, 2022
99
February, 2021
25
November, 2021
14
June, 2020
8
May, 2021
7
February, 2024
5
August, 2017
4
October, 2022
3
January, 2022
3
March, 2024
2
March, 2020
Available data
301
bed bed3+
69
bed bed9
14
bigWig
3
tsv
Organism
376
Homo sapiens
Biosample type
234
tissue
70
cell line
69
primary cell
3
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
351
AMP
25
ENCODE
Genome assembly (visualization)
370
hg19
99
GRCh38
BIOSAMPLE
TYPE
376 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
variant allelic effects
eQTL
gene expression
tissue
small intestine
29
17
15
1
1
large intestine
27
14
13
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
1
Peyer's patch
7
3
3
1
+ See 16 more…
cell line
MCF-7
9
6
5
1
3
2
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
T47D
3
2
2
HCT116
2
3
1
+ See 6 more…
primary cell
mammary gland epithelial cell
3
4
3
1
1
1
mammary epithelial cell
3
1
1
1
4
fibroblast of mammary gland
2
1
1
1
2
1
myoepithelial cell of mammary gland
4
2
2
luminal epithelial cell of mammary gland
1
3
1
2
+ See 7 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
See all biosamples
Download