Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
213
candidate regulatory elements
123
target gene predictions
108
chromatin state
37
accessible chromatin
13
binding sites
13
gene expression
12
histone modifications
9
eQTL
7
variant allelic effects
6
Fine-mapped variants
2
caQTL
1
differential activity
Date released
299
September, 2022
137
February, 2021
18
February, 2024
17
November, 2021
13
June, 2020
11
May, 2021
10
March, 2020
6
February, 2020
5
August, 2017
5
January, 2020
5
May, 2020
4
March, 2024
4
October, 2022
3
January, 2022
3
May, 2022
2
May, 2019
1
August, 2021
1
October, 2019
Available data
414
bed bed3+
103
bed bed9
19
bigWig
16
tsv
3
bigBed bed9
Organism
544
Homo sapiens
Biosample type
435
tissue
56
primary cell
51
cell line
2
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
527
AMP
17
ENCODE
Genome assembly (visualization)
532
hg19
138
GRCh38
BIOSAMPLE
TYPE
544 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
gene expression
histone modifications
eQTL
variant allelic effects
Fine-mapped variants
caQTL
differential activity
tissue
muscle of arm
33
16
16
1
1
muscle of leg
27
14
15
2
large intestine
27
14
13
1
1
muscle of back
28
13
13
sigmoid colon
10
7
5
1
+ See 28 more…
primary cell
skeletal muscle satellite cell
2
2
2
5
2
skeletal muscle fiber
5
2
2
type I muscle cell
1
3
1
1
1
type II muscle cell
1
3
1
1
1
colon epithelial cell
3
3
+ See 5 more…
cell line
HT-29
2
2
1
1
1
1
LHCN-M2
2
1
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
A673
2
2
1
+ See 6 more…
in vitro differentiated cells
myotube
1
1
See all biosamples
Download