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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
531
ATAC-seq
212
DNase-seq
84
snATAC-seq
34
Hi-C
5
FAIRE-seq
Assay category
1918
Transcription
1831
DNA binding
832
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
85
August, 2021
49
February, 2021
38
October, 2019
34
May, 2021
28
November, 2019
16
January, 2021
16
July, 2019
14
March, 2020
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
3
January, 2018
3
October, 2022
3
September, 2020
2
November, 2020
1
August, 2022
1
December, 2018
1
March, 2023
Available data
492
bed narrowPeak
389
bam
355
bigWig
241
bigBed narrowPeak
214
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
103
fastq
64
xls
60
zippedFastqFolder
23
hic
20
bedpe bed3+
14
tsv
12
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
1
bedpe
1
tar
Organism
865
Homo sapiens
Biosample type
486
tissue
298
primary cell
47
in vitro differentiated cells
35
cell line
Organ
182
pancreas
164
kidney
131
epithelium
80
heart
63
vasculature
61
blood vessel
49
artery
48
limb
41
musculature of body
40
brain
35
connective tissue
33
liver
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
5
vein
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
726
AMP
100
HPAP
29
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
480
hg19
443
GRCh38
Lab
588
AMP-T2D consortium
100
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
51
inconsistent ontology term
33
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
866 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
Hi-C
FAIRE-seq
tissue
kidney
75
13
6
1
1
islet of Langerhans
68
1
7
3
1
coronary artery
36
2
liver
20
2
1
heart
18
1
+ See 63 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 60 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 8 more…
cell line
EndoC_BH1
19
1
smooth muscle cell of the coronary artery
8
HepG2
1
2
Panc1
1
1
GM12878
1
+ See 1 more…
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