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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
Hi-C
Assay category
1908
Transcription
1813
DNA binding
831
DNA accessibility
97
DNA methylation
30
3D chromatin structure
Date released
10
March, 2020
8
July, 2019
5
October, 2019
3
October, 2022
2
November, 2019
1
August, 2021
1
December, 2018
Available data
20
hic
18
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
fastq
Organism
30
Homo sapiens
Biosample type
14
tissue
9
primary cell
4
in vitro differentiated cells
3
cell line
Organ
8
epithelium
7
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
3
brain
3
heart
3
liver
2
vein
1
connective tissue
1
kidney
Project
27
AMP
3
HPAP
Genome assembly (visualization)
25
hg19
1
GRCh38
Lab
26
AMP-T2D consortium
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
30 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
See all biosamples
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