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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 531ATAC-seq
  • 212DNase-seq
  • 84snATAC-seq
  • 5FAIRE-seq
Assay category
  • 1918Transcription
  • 1871DNA binding
  • 832DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 187June, 2019
  • 105February, 2023
  • 100May, 2020
  • 99May, 2022
  • 82August, 2021
  • 49February, 2021
  • 34May, 2021
  • 33October, 2019
  • 26November, 2019
  • 16January, 2021
  • 14September, 2018
  • 11August, 2017
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8July, 2019
  • 8October, 2017
  • 7August, 2020
  • 5September, 2017
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 2November, 2020
  • 1August, 2022
Available data
  • 492bed narrowPeak
  • 389bam
  • 350bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 831Homo sapiens
Biosample type
  • 470tissue
  • 288primary cell
  • 43in vitro differentiated cells
  • 31cell line
Organ
  • 173pancreas
  • 163kidney
  • 123epithelium
  • 77heart
  • 58vasculature
  • 56blood vessel
  • 49artery
  • 44limb
  • 37brain
  • 35musculature of body
  • 34connective tissue
  • 32eye
  • 29liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 696AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 453hg19
  • 441GRCh38
Lab
  • 562AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 46inconsistent ontology term
  • 29audit script error
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

832 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans68171
coronary artery362
liver202
heart18
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
Panc11
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