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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
ATAC-seq
207
DNase-seq
Assay category
1401
Transcription
1226
DNA binding
441
DNA accessibility
17
DNA methylation
2
3D chromatin structure
Date released
187
June, 2019
74
August, 2021
35
February, 2023
26
November, 2019
18
February, 2021
14
October, 2019
14
September, 2018
13
May, 2021
11
May, 2023
9
November, 2018
8
October, 2017
7
August, 2017
7
August, 2020
6
July, 2019
5
September, 2017
3
September, 2020
2
March, 2019
2
November, 2020
Available data
415
bed narrowPeak
318
bam
258
bigWig
231
bigBed narrowPeak
206
bed broadPeak
205
bigBed broadPeak
204
bed bed3+
64
xls
53
fastq
2
bed bed3
Organism
441
Homo sapiens
Biosample type
335
tissue
76
primary cell
18
in vitro differentiated cells
12
cell line
Organ
154
kidney
77
heart
67
pancreas
57
vasculature
55
blood vessel
51
epithelium
49
artery
44
limb
34
brain
33
musculature of body
18
ureter
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
2
spleen
2
vein
Project
431
AMP
10
HPAP
Genome assembly (visualization)
453
hg19
441
GRCh38
Lab
353
AMP-T2D consortium
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
15
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
441 results
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Clear Filters
ATAC-seq
DNase-seq
tissue
kidney
75
13
coronary artery
36
2
islet of Langerhans
22
1
heart
18
muscle of arm
17
+ See 52 more…
primary cell
monocyte
13
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 24 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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