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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
ATAC-seq
186
DNase-seq
5
FAIRE-seq
1
snATAC-seq
Assay category
1403
Transcription
1305
DNA binding
453
DNA accessibility
27
3D chromatin structure
19
DNA methylation
Date released
164
June, 2019
45
February, 2023
45
May, 2020
39
May, 2022
26
November, 2019
22
February, 2021
18
May, 2021
18
October, 2019
14
September, 2018
12
August, 2021
10
August, 2017
10
November, 2018
7
July, 2019
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
March, 2019
2
November, 2020
Available data
370
bed narrowPeak
363
bam
315
bigWig
218
bigBed narrowPeak
186
bed bed3+
184
bed broadPeak
183
bigBed broadPeak
63
fastq
12
bed bed3
7
bed bedgraph
4
txt
2
tsv
1
tar
Organism
453
Homo sapiens
Biosample type
288
tissue
107
primary cell
43
in vitro differentiated cells
15
cell line
Organ
79
pancreas
73
kidney
50
epithelium
44
limb
39
heart
35
musculature of body
33
connective tissue
31
eye
28
liver
24
brain
22
vasculature
20
blood vessel
18
ureter
14
artery
12
bone element
12
skeleton
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
453
AMP
Genome assembly (visualization)
453
hg19
441
GRCh38
Lab
402
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
24
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
453 results
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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
42
1
1
liver
20
2
retina
15
3
muscle of arm
17
heart
16
+ See 47 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 45 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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