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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
428
ATAC-seq
212
DNase-seq
82
snATAC-seq
5
FAIRE-seq
Assay category
1831
DNA binding
1824
Transcription
727
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
427
bed narrowPeak
389
bam
347
bigWig
241
bigBed narrowPeak
208
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
102
fastq
64
xls
60
zippedFastqFolder
4
bed bedgraph
2
bed bed3
2
tsv
1
tar
1
txt
Organism
726
Homo sapiens
Biosample type
389
tissue
276
primary cell
31
cell line
31
in vitro differentiated cells
Organ
163
kidney
160
pancreas
111
epithelium
44
limb
42
heart
36
brain
35
musculature of body
29
liver
24
connective tissue
23
vasculature
21
blood vessel
18
ureter
14
artery
10
lung
9
blood
9
bodily fluid
8
bone element
8
skeleton
7
adipose tissue
5
eye
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
604
AMP
97
HPAP
16
T1D
10
LungMap
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
473
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
37
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
February, 2023
BIOSAMPLE
ASSAY
727 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
57
1
5
1
liver
20
2
heart
18
muscle of arm
17
+ See 55 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 54 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
embryonic stem cell
5
cardiac precursors (cardiac muscle cell)
1
+ See 2 more…
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