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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 506ATAC-seq
  • 203DNase-seq
  • 84snATAC-seq
  • 5FAIRE-seq
  • 1whole genome sequencing assay
Assay category
  • 1718DNA binding
  • 1437Transcription
  • 798DNA accessibility
  • 90DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Date released
  • 181June, 2019
  • 100May, 2020
  • 99May, 2022
  • 95February, 2023
  • 81August, 2021
  • 44February, 2021
  • 34May, 2021
  • 30October, 2019
  • 25November, 2019
  • 16January, 2021
  • 14September, 2018
  • 11May, 2023
  • 10April, 2020
  • 9August, 2017
  • 9November, 2018
  • 8July, 2019
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 4March, 2019
  • 4March, 2020
  • 3September, 2020
  • 2January, 2018
  • 1August, 2022
Available data
  • 475bed narrowPeak
  • 375bam
  • 332bigWig
  • 228bigBed narrowPeak
  • 199bed broadPeak
  • 197bed bed3+
  • 197bigBed broadPeak
  • 98fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 6bed bed3
  • 4txt
  • 3bed bedgraph
  • 1tar
  • 1vcf
Organism
  • 798Homo sapiens
Biosample type
  • 462tissue
  • 280primary cell
  • 32cell line
  • 25in vitro differentiated cells
Organ
  • 173pancreas
  • 163kidney
  • 123epithelium
  • 77heart
  • 58vasculature
  • 56blood vessel
  • 49artery
  • 44limb
  • 37brain
  • 35musculature of body
  • connective tissue
  • 32eye
  • 30liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 663AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 427GRCh38
  • 420hg19
Lab
  • 530AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 3Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 42inconsistent ontology term
  • 29audit script error
  • 1inconsistent replicate
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

799 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
whole genome sequencing assay
tissue
kidney751361
islet of Langerhans68171
coronary artery362
liver202
heart18
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
HepG211
GM128781
Panc11
in vitro differentiated cells
neural progenitor cell10
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
Progenitor cell of Hypothalamus (neural progenitor cell)1
cardiac precursors (cardiac muscle cell)1
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