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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1800
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
25
DNase-seq
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
25
DNA accessibility
Date released
June, 2019
10
October, 2019
9
November, 2018
5
August, 2017
1
November, 2020
Available data
22
bam
22
bed narrowPeak
22
bigBed narrowPeak
22
bigWig
19
bed broadPeak
19
bigBed broadPeak
17
bed bed3+
12
fastq
Organism
25
Homo sapiens
Biosample type
15
tissue
7
primary cell
2
cell line
1
in vitro differentiated cells
Organ
5
epithelium
4
blood vessel
4
limb
4
liver
4
pancreas
4
vasculature
3
connective tissue
3
kidney
2
artery
2
brain
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
25
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
25
AMP-T2D consortium
month_released!
June, 2019
BIOSAMPLE
ASSAY
25 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
tibial artery
2
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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