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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
7
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
47
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
6
February, 2021
Available data
41
zippedFastqFolder
6
fastq
6
tsv
Organism
57
Homo sapiens
Biosample type
47
primary cell
6
cell line
4
tissue
Organ
57
pancreas
53
epithelium
Project
47
HPAP
10
AMP
Lab
47
Klaus Kaestner, Upenn
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
57 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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