Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1507
total RNA-seq
454
ATAC-seq
329
single cell RNA-seq
212
DNase-seq
87
RNA microarray
62
snATAC-seq
57
pCHi-C
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
34
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
May, 2022
12
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
February, 2021
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
44
Homo sapiens
Biosample type
31
tissue
7
cell line
6
primary cell
Organ
20
pancreas
12
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
38
AMP
6
HPAP
Genome assembly (visualization)
17
GRCh38
Lab
28
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
month_released!
May, 2022
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 9 more…
cell line
EndoC_BH1
6
HepG2
1
primary cell
pancreatic alpha cell
6
See all biosamples
Download