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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1811
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
363
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
12
July, 2019
10
November, 2020
9
August, 2017
6
February, 2021
5
November, 2018
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
15
fastq
6
tsv
Organism
83
Homo sapiens
Biosample type
47
primary cell
29
tissue
7
cell line
Organ
61
pancreas
53
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
36
AMP
Genome assembly (visualization)
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
26
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
83 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
EndoC_BH1
6
HepG2
1
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