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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1831ChIP-seq
  • 1439total RNA-seq
  • 417ATAC-seq
  • 312single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 82snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 33Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 312Transcription
Target of assay
  • 3control
Date released
  • 106August, 2021
  • 48July, 2018
  • 43April, 2018
  • 40September, 2020
  • 34May, 2022
  • 18February, 2021
  • 9April, 2020
  • 3August, 2018
  • 3December, 2019
  • 3July, 2019
  • 3June, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • 205tsv
  • 128fastq
  • 100bam
  • 100bigWig
  • 52zippedFastqFolder
  • 13txt
  • 8csv
Organism
  • 312Homo sapiens
Biosample type
  • 187primary cell
  • 123tissue
  • 2in vitro differentiated cells
Organ
  • 92heart
  • 74pancreas
  • 70epithelium
  • 14kidney
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 4connective tissue
  • 3brain
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 218AMP
  • 85HPAP
  • 9LungMap
Genome assembly (visualization)
  • 100GRCh38
  • 100hg19
Lab
  • 210AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 9Xin Sun, UCSD
  • 8Katalin Susztak, Upenn
Audit category:
  • 9inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

312 results

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Clear Filters
single cell RNA-seq
primary cell
Langerhans cell85
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
tissue
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
kidney14
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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