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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1831ChIP-seq
  • 1439total RNA-seq
  • 417ATAC-seq
  • 312single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 82snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 82DNA accessibility
Date released
  • 27February, 2021
  • 22May, 2022
  • 16January, 2021
  • 10April, 2020
  • 6August, 2021
  • 1August, 2022
Available data
  • 27fastq
  • 21zippedFastqFolder
  • 1bed bed3+
  • 1txt
Organism
  • 81Homo sapiens
Biosample type
  • 56primary cell
  • 26tissue
Organ
  • 10lung
  • 9pancreas
  • 8blood
  • 8bodily fluid
  • 6kidney
  • 1musculature of body
Project
  • 48HPAP
  • 16T1D
  • 10LungMap
  • 8AMP
Genome assembly (visualization)
  • 1hg19
Lab
  • 48Klaus Kaestner, Upenn
  • 16Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 6Katalin Susztak, Upenn
  • 2AMP-T2D consortium
Audit category:
  • 29audit script error
BIOSAMPLE
ASSAY

82 results

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Clear Filters
snATAC-seq
primary cell
Langerhans cell48
peripheral blood mononuclear cell8
tissue
lung10
kidney6
islet of Langerhans5
pancreas4
skeletal muscle tissue1
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