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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 896total RNA-seq
  • 529ChIP-seq
  • 161DNase-seq
  • 122ATAC-seq
  • 16small RNA-seq
  • 11Hi-C
  • 9RRBS
  • 6single cell RNA-seq
  • 4FAIRE-seq
  • 1snATAC-seq
Assay category
  • 123DNA accessibility
Date released
  • 39May, 2022
  • 33February, 2023
  • 20November, 2019
  • 8February, 2021
  • 7October, 2017
  • 5July, 2019
  • 3October, 2019
  • 2August, 2017
  • 2January, 2018
  • 2March, 2019
  • 2March, 2020
Available data
  • 109bed narrowPeak
  • 61bam
  • 41bigWig
  • 27fastq
  • 5bed bed3
  • 3bigBed narrowPeak
  • 1bed bed3+
  • 1bed broadPeak
  • 1tsv
  • 1txt
Organism
  • 123Homo sapiens
Biosample type
  • 123tissue
  • 84primary cell
  • 42in vitro differentiated cells
  • 13cell line
Organ
  • 46pancreas
  • 27eye
  • 21liver
  • 12bone element
  • 12epithelium
  • 12skeleton
  • 8limb
  • 6adipose tissue
  • 6connective tissue
  • 4heart
  • 3blood vessel
  • 3vasculature
  • 2artery
  • 2musculature of body
  • 1brain
  • 1nerve
  • 1spleen
Project
  • 123AMP
Genome assembly (visualization)
  • 159GRCh38
  • 123hg19
Lab
  • 82AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 18Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

123 results

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Clear Filters
ATAC-seq
snATAC-seq
tissue
islet of Langerhans42
liver20
retina15
pigmented layer of retina12
body of pancreas4
adipose tissue3
heart left ventricle2
skeletal muscle tissue11
acetabular part of hip bone1
adipose tissue(adipose white tissue)1
brain1
coronary artery1
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
ilium1
ischium1
omental fat pad1
proximal epiphysis1
proximal epiphysis of femur1
proximal epiphysis of humerus1
proximal epiphysis of tibia1
pubis1
right atrium auricular region1
right lobe of liver1
spleen1
subcutaneous adipose tissue1
thoracic aorta1
tibial artery1
tibial nerve1
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