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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1659ChIP-seq
  • 1241total RNA-seq
  • 343ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 7DNA accessibility
Date released
  • 2July, 2019
  • 1August, 2017
  • 1August, 2022
  • 1May, 2022
  • 1November, 2018
  • 1October, 2019
Available data
  • 5bam
  • 5bed narrowPeak
  • 5bigBed narrowPeak
  • 5bigWig
  • 2fastq
  • 1bed bed3+
  • 1tar
  • 1txt
Organism
  • 7Homo sapiens
Biosample type
  • 6tissue
  • 1primary cell
Organ
  • 3pancreas
  • 1blood vessel
  • 1brain
  • 1epithelium
  • 1kidney
  • 1musculature of body
  • 1vasculature
  • 1vein
Project
  • LungMap
  • 7AMP
Genome assembly (visualization)
  • 6hg19
Lab
  • 48Klaus Kaestner, Upenn
  • 18Kyle Gaulton, UCSD
  • 7AMP-T2D consortium
  • 6Katalin Susztak, Upenn
  • 0Xin Sun, UCSD
Audit category:
  • 2audit script error
award.project!
  • LungMap
BIOSAMPLE
ASSAY

7 results

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Clear Filters
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans11
frontal cortex1
kidney1
pancreas1
skeletal muscle tissue1
primary cell
endothelial cell of umbilical vein1
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