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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1659ChIP-seq
  • 1241total RNA-seq
  • 343ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 2DNA accessibility
Date released
  • 32March, 2020
  • 4October, 2019
  • 2February, 2021
  • 1August, 2018
  • 1August, 2022
  • 1May, 2020
  • 1May, 2022
Available data
  • 31tsv
  • 3bed bed3+
  • 3bedpe bed3+
  • 2ibed
  • 1bam
  • 1fastq
  • 1txt
Organism
  • 42Homo sapiens
Biosample type
  • 26tissue
  • 6cell line
  • 5in vitro differentiated cells
  • 4stem cell
  • 1primary cell
Organ
  • 4connective tissue
  • 4eye
  • 3heart
  • 3liver
  • 2adipose tissue
  • 2brain
  • 2intestine
  • 2kidney
  • 2musculature of body
  • 2pancreas
  • 1adrenal gland
  • 1blood vessel
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vasculature
Project
  • 42AMP
  • LungMap
Genome assembly (visualization)
  • 5hg19
Lab
  • 48Klaus Kaestner, Upenn
  • 42AMP-T2D consortium
  • 35Kyle Gaulton, UCSD
  • 6Katalin Susztak, Upenn
  • 0Xin Sun, UCSD
Audit category:
  • 8inconsistent ontology term
  • 2audit script error
award.project!
  • LungMap
BIOSAMPLE
ASSAY

42 results

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Clear Filters
pCHi-C
snATAC-seq
tissue
islet of Langerhans41
Ammon's horn1
adipose tissue1
adrenal gland1
aorta1
cell line
HepG22
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
fibroblast cell line1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
embryonic stem cell1
lymphocyte of B lineage (iPSC)1
white fat cell1
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
primary cell
osteoblast1
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