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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 1226ChIP-seq
  • 207DNase-seq
  • 188ATAC-seq
  • 100single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 1Hi-C
Assay category
  • 1400Transcription
  • 1226DNA binding
  • 395DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 769histone modification
  • 768histone
  • 443transcription factor
  • 395narrow histone mark
  • 372broad histone mark
  • 95RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
Available data
  • 2959bam
  • 2890bigWig
  • 1557bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1tagAlign bed3+
Organism
  • 3033Homo sapiens
Biosample type
  • 1772tissue
  • 535primary cell
  • 464cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 635pancreas
  • 565connective tissue
  • 531liver
  • 423adipose tissue
  • 294epithelium
  • 217brain
  • 194kidney
  • 191heart
  • 156vasculature
  • 152blood vessel
  • 96limb
  • 93artery
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2843AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 3167hg19
  • 3039GRCh38
  • 5hg18
Lab
  • 2782AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

3039 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38112
islet of Langerhans26625122
liver1477521
kidney201364
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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