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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
7
single cell RNA-seq
4
Hi-C
2
RNA microarray
Assay category
29
DNA accessibility
7
Transcription
4
3D chromatin structure
Date released
32
February, 2021
4
December, 2019
3
October, 2022
1
August, 2022
1
May, 2022
1
October, 2019
Available data
27
fastq
9
tsv
6
txt
5
csv
4
hic
3
bedpe bed3+
3
cool
1
bed bed3+
Organism
42
Homo sapiens
Biosample type
31
primary cell
9
tissue
2
in vitro differentiated cells
Organ
7
kidney
5
epithelium
4
pancreas
1
blood vessel
1
musculature of body
1
vasculature
1
vein
Project
30
HPAP
12
AMP
Genome assembly (visualization)
5
hg19
Lab
30
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
353
inconsistent ontology term
42
audit script error
28
inconsistent control
1
inconsistent replicate
BIOSAMPLE
ASSAY
42 results
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snATAC-seq
single cell RNA-seq
Hi-C
RNA microarray
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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