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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
56
snATAC-seq
31
DNase-seq
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
114
bam
108
bigWig
69
bed narrowPeak
60
fastq
60
zippedFastqFolder
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
288
Homo sapiens
Biosample type
470
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
91
epithelium
71
pancreas
12
kidney
8
blood
8
bodily fluid
8
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
183
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
107
hg19
76
GRCh38
Lab
183
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
15
inconsistent ontology term
BIOSAMPLE
ASSAY
288 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic acinar cell
9
peripheral blood mononuclear cell
8
pancreatic ductal cell
4
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
gabaergic neuron
3
glutamatergic neuron
3
kidney tubule cell
3
microglial cell/astrocyte
3
oligodendrocyte
3
osteoblast
2
1
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
skeletal muscle myoblast
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
immature natural killer cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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