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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
21
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
48
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
572
bam
559
tsv
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
164
Homo sapiens
Biosample type
101
tissue
46
primary cell
13
cell line
4
in vitro differentiated cells
Organ
92
bone element
10
artery
10
blood vessel
10
heart
10
vasculature
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
5
connective tissue
3
liver
Project
119
AMP
45
HPAP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
119
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
bigWig
BIOSAMPLE
ASSAY
164 results
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RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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