Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
    • Citing CMDGA

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12ATAC-seq
Assay category
  • 12DNA accessibility
Date released
  • 10February, 2023
  • 2February, 2021
Available data
  • 3392bam
  • 3129bigWig
  • 1777bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 12Homo sapiens
Biosample type
  • 5in vitro differentiated cells
  • 5tissue
  • 1cell line
  • 1primary cell
Organ
  • 6connective tissue
  • 4bone element
  • 4skeleton
  • 1brain
  • 1liver
Project
  • 12AMP
Genome assembly (visualization)
  • 12hg19
  • 2GRCh38
Lab
  • 12AMP-T2D consortium
Audit category:
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

12 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
in vitro differentiated cells
chondrocyte5
tissue
acetabular part of hip bone1
brain1
ilium1
ischium1
pubis1
cell line
HepG21
primary cell
osteoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2023 Regents of the University of California.

  • UC San Diego