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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
51
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
72
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
10
February, 2023
2
February, 2021
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
165
Homo sapiens
Biosample type
154
primary cell
5
in vitro differentiated cells
5
tissue
1
cell line
Organ
80
epithelium
80
pancreas
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
153
HPAP
12
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
153
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
BIOSAMPLE
ASSAY
165 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
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