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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
136
ATAC-seq
5
FAIRE-seq
Assay category
1402
Transcription
1350
DNA binding
350
DNA accessibility
17
DNA methylation
5
3D chromatin structure
Date released
187
June, 2019
45
May, 2020
20
May, 2022
14
October, 2019
14
September, 2018
10
August, 2017
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
May, 2021
5
September, 2017
4
March, 2020
3
February, 2023
3
January, 2018
3
September, 2020
2
August, 2021
1
February, 2021
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
350
Homo sapiens
Biosample type
224
tissue
108
primary cell
13
in vitro differentiated cells
5
cell line
Organ
80
kidney
52
epithelium
51
pancreas
38
limb
35
brain
34
heart
34
musculature of body
26
liver
18
connective tissue
18
ureter
15
vasculature
13
blood vessel
6
adipose tissue
6
artery
4
eye
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
340
AMP
10
HPAP
Genome assembly (visualization)
315
hg19
258
GRCh38
Lab
309
AMP-T2D consortium
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
350 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
2
20
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 45 more…
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 47 more…
in vitro differentiated cells
embryonic stem cell
6
adipocyte
1
3
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
cell line
EndoC_BH1
2
GM12878
1
Panc1
1
glomerular visceral epithelial cell
1
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