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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 857ChIP-seq
  • 167total RNA-seq
  • 128single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 857DNA binding
  • 295Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 287August, 2017
  • 94December, 2017
  • 88November, 2018
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3392bam
  • 3126bigWig
  • 1712bed narrowPeak
  • 1584tsv
  • 1282fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 154txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 3cool
  • 2bed bed3
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1275Homo sapiens
Biosample type
  • 427cell line
  • 377tissue
  • 333primary cell
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 465liver
  • 434pancreas
  • 220epithelium
  • 101connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1189AMP
  • 93HPAP
Genome assembly (visualization)
  • 1008hg19
  • 951GRCh38
  • 5hg18
Lab
  • 1163AMP-T2D consortium
  • 93Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 11inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1282 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
tissue
islet of Langerhans281032011
liver67121
body of pancreas33422
spleen20121
pancreas1621
primary cell
pancreatic alpha cell132512136
Langerhans cell3427
pancreatic beta cell13111210
pancreatic ductal cell13494
pancreatic acinar cell8495
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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