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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
801
ChIP-seq
209
DNase-seq
27
ATAC-seq
23
Hi-C
5
FAIRE-seq
Assay category
801
DNA binding
241
DNA accessibility
23
3D chromatin structure
Target of assay
405
transcription factor
391
histone
391
histone modification
242
broad histone mark
149
narrow histone mark
93
RNA binding protein
81
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
74
October, 2019
73
November, 2018
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
10
March, 2020
6
October, 2017
5
September, 2017
3
October, 2022
2
August, 2021
2
July, 2019
2
November, 2019
1
March, 2019
1
March, 2023
1
November, 2020
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1059
Homo sapiens
Biosample type
572
tissue
357
cell line
115
primary cell
21
in vitro differentiated cells
Organ
360
liver
127
brain
105
kidney
98
pancreas
97
heart
86
vasculature
84
limb
82
blood vessel
82
epithelium
54
blood
54
bodily fluid
49
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
15
vein
13
spleen
10
adipose tissue
6
eye
Project
1061
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
999
GRCh38
985
hg19
Lab
1058
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
29
inconsistent ontology term
28
inconsistent control
4
audit script error
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
BIOSAMPLE
ASSAY
1065 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
liver
38
2
1
kidney
18
13
1
1
heart left ventricle
28
3
1
body of pancreas
26
4
heart
7
18
1
+ See 54 more…
cell line
HepG2
293
1
GM12878
54
Panc1
6
1
EndoC_BH1
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
2
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
skeletal muscle satellite cell
7
+ See 25 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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