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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 3ChIP-seq
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 3DNA binding
  • 1DNA accessibility
Target of assay
  • 3transcription factor
  • 1RNA binding protein
Date released
  • 3November, 2017
  • 2March, 2020
  • 1October, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 6Homo sapiens
Biosample type
  • 3cell line
  • 2in vitro differentiated cells
  • 1primary cell
Organ
  • 3liver
  • 1blood vessel
  • 1epithelium
  • 1vasculature
  • 1vein
Project
  • 6AMP
Genome assembly (visualization)
  • 6hg19
Lab
  • 6AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
BIOSAMPLE
ASSAY

6 results

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ChIP-seq
pCHi-C
FAIRE-seq
cell line
HepG23
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
primary cell
endothelial cell of umbilical vein1
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