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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398ChIP-seq
Assay category
  • 398DNA binding
Target of assay
  • 321histone
  • 321histone modification
  • 174narrow histone mark
  • 147broad histone mark
  • 68control
  • 9transcription factor
Date released
  • 90May, 2021
  • 85August, 2017
  • 78November, 2017
  • 50May, 2020
  • 49October, 2019
  • 24August, 2021
  • 14October, 2017
  • 8February, 2021
Available data
  • 3392bam
  • 3126bigWig
  • 1712bed narrowPeak
  • 1584tsv
  • 1282fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 154txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 3cool
  • 2bed bed3
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 391Homo sapiens
Biosample type
  • 238tissue
  • 100primary cell
  • 40in vitro differentiated cells
  • 20cell line
Organ
  • 118brain
  • 86liver
  • 22connective tissue
  • 19pancreas
  • 15musculature of body
  • 8adipose tissue
  • 7epithelium
  • 6artery
  • 6blood vessel
  • 6heart
  • 6vasculature
  • 1pituitary gland
Project
  • 314AMP
  • 84T1D
Genome assembly (visualization)
  • 246GRCh38
  • 238hg19
Lab
  • 314AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

398 results

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Clear Filters
ChIP-seq
tissue
liver70
substantia nigra16
caudate nucleus15
layer of hippocampus15
skeletal muscle tissue15
primary cell
monocyte84
skeletal muscle myoblast12
hepatocyte4
in vitro differentiated cells
neural progenitor cell20
adipocyte14
cardiomyocytes3
pancreatic PP cell3
cell line
HepG212
smooth muscle cell of the coronary artery6
iPSC derived cell line2
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