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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 286total RNA-seq
  • 212ChIP-seq
  • 188ATAC-seq
  • 152single cell RNA-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 10MeRIP-seq
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 442Transcription
  • 270DNA accessibility
  • 212DNA binding
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 172histone
  • 172histone modification
  • 95broad histone mark
  • 77narrow histone mark
  • 28transcription factor
  • 17control
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 235May, 2021
  • 198May, 2022
  • 168August, 2021
  • 102February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 40May, 2024
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 10November, 2020
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 3October, 2022
  • 1October, 2017
Available data
  • 310bigWig
  • 274bed narrowPeak
  • 205bam
  • 195fastq
  • 153zippedFastqFolder
  • 112tsv
  • 84tagAlign
  • 66txt
  • 64xls
  • 7hic
  • 5bedpe bed3+
  • 4bed bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 1014Homo sapiens
Biosample type
  • 564primary cell
  • 352tissue
  • 54in vitro differentiated cells
  • 47cell line
  • 2stem cell
Organ
  • 221pancreas
  • 191kidney
  • 158epithelium
  • 71liver
  • 40heart
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 388AMP
  • 324HPAP
  • 236T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 309GRCh38
  • 288hg19
Lab
  • AMP-T2D consortium
  • 343Kyle Gaulton, UCSD
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 13inconsistent ontology term
lab.title!
  • AMP-T2D consortium
BIOSAMPLE
ASSAY

1019 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
MeRIP-seq
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
tissue
kidney49755861
islet of Langerhans1234642
left cardiac atrium40
liver2020
lung910
in vitro differentiated cells
embryonic stem cell5376
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
neuron cell of Hypothalamus (neuron)1
cell line
HepG2918121
EndoC_BH1632
EndoC-BH111
HEK293T2
Synthesized DNA1
stem cell
SB Ad3.111
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