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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
ATAC-seq
212
DNase-seq
66
snATAC-seq
5
FAIRE-seq
Assay category
1803
Transcription
1677
DNA binding
780
DNA accessibility
97
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
81
May, 2022
49
February, 2021
33
October, 2019
29
May, 2021
26
November, 2019
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
474
bed narrowPeak
371
bam
345
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
84
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
779
Homo sapiens
Biosample type
431
tissue
280
primary cell
38
in vitro differentiated cells
31
cell line
Organ
163
kidney
134
pancreas
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
673
AMP
97
HPAP
10
LungMap
Genome assembly (visualization)
441
GRCh38
430
hg19
Lab
562
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
780 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
39
1
1
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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