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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
49
total RNA-seq
11
single cell RNA-seq
6
snATAC-seq
2
Capture-C
1
Hi-C
Assay category
86
DNA accessibility
60
Transcription
1
3D chromatin structure
Date released
132
August, 2021
14
May, 2023
3
February, 2023
Available data
68
bed narrowPeak
64
xls
60
txt
5
bigWig
3
bed bedgraph
2
bed bed3+
1
hic
Organism
149
Homo sapiens
Biosample type
142
tissue
7
in vitro differentiated cells
Organ
142
kidney
4
connective tissue
Project
149
AMP
Genome assembly (visualization)
75
GRCh38
8
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Capture-C
Hi-C
tissue
kidney
75
49
11
6
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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