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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
total RNA-seq
34
ATAC-seq
28
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
118
Transcription
62
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
23
February, 2023
19
April, 2020
18
May, 2022
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
txt
2
bed bed3+
Organism
355
Homo sapiens
Biosample type
239
primary cell
65
tissue
47
in vitro differentiated cells
5
cell line
Organ
45
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
101
AMP
19
LungMap
Genome assembly (visualization)
238
hg19
180
GRCh38
Lab
3817
AMP-T2D consortium
337
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
files.file_type!
txt
BIOSAMPLE
ASSAY
356 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
29
6
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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