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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
187
DNase-seq
84
RNA microarray
39
ChIP-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
563
Transcription
236
DNA accessibility
39
DNA binding
6
DNA methylation
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
9
transcription factor
8
broad histone mark
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
790
bam
761
bigWig
559
tsv
233
bed narrowPeak
210
bigBed narrowPeak
189
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
89
txt
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
Organism
933
Homo sapiens
Biosample type
708
tissue
103
primary cell
96
cell line
26
in vitro differentiated cells
Organ
473
connective tissue
387
adipose tissue
150
bone element
101
heart
89
kidney
73
vasculature
71
blood vessel
68
artery
52
epithelium
43
musculature of body
38
limb
36
pancreas
30
brain
18
ureter
8
skeleton
7
eye
5
liver
Project
888
AMP
45
HPAP
Genome assembly (visualization)
778
GRCh38
761
hg19
Lab
888
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
154
inconsistent ontology term
32
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
933 results
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Clear Filters
total RNA-seq
DNase-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
heart
18
kidney
13
5
+ See 51 more…
primary cell
Langerhans cell
27
12
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic alpha cell
6
+ See 20 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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