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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
total RNA-seq
103
ATAC-seq
49
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
262
Transcription
105
DNA accessibility
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
180
tsv
167
bigWig
164
bam
126
fastq
65
bed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
Organism
372
Homo sapiens
Biosample type
215
tissue
136
primary cell
16
in vitro differentiated cells
6
cell line
Organ
213
pancreas
85
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
16
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
274
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
209
hg19
199
GRCh38
Lab
271
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
373 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
125
11
2
coronary artery
35
retina
2
15
pigmented layer of retina
2
12
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
7
pancreatic beta cell
10
9
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 15 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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