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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
14
total RNA-seq
1
GRO-seq
1
pCHi-C
Assay category
22
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
3
May, 2021
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
14
bed narrowPeak
14
tsv
3
bed bed3+
Organism
38
Homo sapiens
Biosample type
tissue
29
in vitro differentiated cells
8
cell line
1
primary cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
0
nerve
Project
37
AMP
1
T1D
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
37
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
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