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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 10ChIP-seq
  • 1DNase-seq
  • 1RRBS
  • 1pCHi-C
  • 1small RNA-seq
  • 1total RNA-seq
Assay category
  • 10DNA binding
  • 2Transcription
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 8histone
  • 8histone modification
  • 4broad histone mark
  • 4narrow histone mark
  • 2control
Date released
  • 11June, 2019
  • 3July, 2019
  • 1May, 2021
Available data
  • 13bam
  • 11bigWig
  • 9bed narrowPeak
  • 9bigBed narrowPeak
  • 2tsv
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bigBed bedMethyl
  • 1bigBed broadPeak
Organism
  • 15Homo sapiens
Biosample type
  • tissue
  • 15primary cell
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 0nerve
Project
  • 14AMP
  • 1T1D
Genome assembly (visualization)
  • 12hg19
  • 11GRCh38
Lab
  • 14AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Audit category:
  • 8inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

15 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
pCHi-C
small RNA-seq
total RNA-seq
primary cell
skeletal muscle satellite cell811
skeletal muscle cell211
megakaryocyte1
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