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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 17ChIP-seq
  • 2DNase-seq
  • 2Hi-C
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 17DNA binding
  • 3DNA accessibility
  • 23D chromatin structure
Target of assay
  • 15histone
  • 15histone modification
  • 9broad histone mark
  • 6narrow histone mark
  • 2control
Date released
  • 21October, 2019
  • 1March, 2020
  • 1May, 2021
Available data
  • 20bam
  • 15bigWig
  • 13bed narrowPeak
  • 13bigBed narrowPeak
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 2bed bed3+
  • 2hic
  • 1bedpe bed3+
  • 1tar
Organism
  • 23Homo sapiens
Biosample type
  • tissue
  • 23primary cell
Organ
  • 509epithelium
  • 441pancreas
  • 430liver
  • 137connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 69blood
  • 69bodily fluid
  • 68artery
  • 55kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 0nerve
Project
  • 22AMP
  • 1T1D
Genome assembly (visualization)
  • 17hg19
  • 12GRCh38
Lab
  • 22AMP-T2D consortium
  • 1Kyle Gaulton, UCSD
Audit category:
  • 1audit script error
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

23 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein17221
megakaryocyte1
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