Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema
    • Citing CMDGA

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 29total RNA-seq
  • 20ATAC-seq
  • 18ChIP-seq
  • 2STARR-seq
  • 1Hi-C
  • 1whole genome sequencing assay
Assay category
  • 29Transcription
  • 20DNA accessibility
  • 18DNA binding
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 40May, 2022
  • 31August, 2021
Available data
  • 34bed narrowPeak
  • 34bigWig
  • 9tsv
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 71Homo sapiens
Biosample type
  • 40tissue
  • 31cell line
Organ
  • 221pancreas
  • 191kidney
  • 158epithelium
  • 71liver
  • 40heart
  • 19lung
  • blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
  • 0nerve
Project
  • 71AMP
Genome assembly (visualization)
  • 35hg19
Lab
  • AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
lab.title!
  • AMP-T2D consortium
organ_slims!
  • blood
BIOSAMPLE
ASSAY

71 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver2020
cell line
HepG2918211
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2024 Regents of the University of California.

  • UC San Diego